Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacca acetoxidans DSM 11109 (GCF_000195295.1)

Found 17 curated entries in PaperBLAST's database that match '2.4.2.18' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfobacca acetoxidans DSM 11109, or try another query

trpD DESAC_RS13315 Desac_2676 WP_013707600.1: anthranilate phosphoribosyltransferase
is similar to:
PaperBLAST

TRPD_THET8 / Q5SH88: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus
TRPD_THETH / P83827: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus

43% id,
99% cov

TRPD_XANCP / Q8PD71: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Xanthomonas campestris

42% id,
96% cov

TRPD_MYCTU / P9WFX5: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Mycobacterium tuberculosis
A5U4M0: anthranilate phosphoribosyltransferase (EC 2.4.2.18) from Mycobacterium tuberculosis
P9WFX5: anthranilate phosphoribosyltransferase (EC 2.4.2.18) from Mycobacterium tuberculosis

41% id,
92% cov

More...

trpD DESAC_RS13440 Desac_2702 WP_013707626.1: anthranilate phosphoribosyltransferase
is similar to:
PaperBLAST

TRPD_XANCP / Q8PD71: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Xanthomonas campestris

33% id,
98% cov

TRPD_THET8 / Q5SH88: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus
TRPD_THETH / P83827: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus

32% id,
98% cov

TRPD_MYCTU / P9WFX5: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Mycobacterium tuberculosis
A5U4M0: anthranilate phosphoribosyltransferase (EC 2.4.2.18) from Mycobacterium tuberculosis
P9WFX5: anthranilate phosphoribosyltransferase (EC 2.4.2.18) from Mycobacterium tuberculosis

29% id,
91% cov

More...

DESAC_RS09140 Desac_1831 WP_013706780.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

40% id,
35% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

39% id,
35% cov

DESAC_RS12815 Desac_2573 WP_148231245.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

37% id,
35% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

36% id,
35% cov

guaA DESAC_RS10650 Desac_2142 WP_013707080.1: glutamine-hydrolyzing GMP synthase
is similar to:
PaperBLAST

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

29% id,
39% cov

carA DESAC_RS05155 Desac_1041 WP_041283816.1: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
is similar to:
PaperBLAST

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

26% id,
30% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

26% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory