Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacca acetoxidans DSM 11109 (GCF_000195295.1)

Found 116 curated entries in PaperBLAST's database that match '4.1.2.13' as complete word(s).

These curated entries have 92 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfobacca acetoxidans DSM 11109, or try another query

DESAC_RS06270 Desac_1262 WP_013706233.1: class I fructose-bisphosphate aldolase
is similar to:
PaperBLAST

ALF1_ECOLI / P0A991: Fructose-bisphosphate aldolase class 1; Fructose-bisphosphate aldolase class I; FBP aldolase; EC 4.1.2.13 from Escherichia coli
DhnA / b2097: fructose-bisphosphate aldolase class I (EC 4.1.2.13) from Escherichia coli
fbaB / P0A991: fructose-bisphosphate aldolase class I (EC 4.1.2.13) from Escherichia coli

66% id,
99% cov

ALF1_HALS3 / B0R3Y0: Fructose-bisphosphate aldolase class 1; Fructose-bisphosphate aldolase class I; FBP aldolase; EC 4.1.2.13 from Halobacterium salinarum

27% id,
94% cov

fba / P58314: fructose-1,6-bisphosphate aldolase subunit (EC 4.1.2.13) from Pyrococcus furiosus

26% id,
89% cov

More...

fbp DESAC_RS10530 Desac_2117 WP_013707055.1: fructose-1,6-bisphosphate aldolase/phosphatase
is similar to:
PaperBLAST

FBPAP_MOOTA / Q2RG86: Fructose-1,6-bisphosphate aldolase/phosphatase; FBP A/P; FBP aldolase/phosphatase; EC 3.1.3.11; EC 4.1.2.13 from Moorella thermoacetica

66% id,
96% cov

FBPAP_IGNH4 / A8A9E4: Fructose-1,6-bisphosphate aldolase/phosphatase; FBP A/P; FBP aldolase/phosphatase; EC 3.1.3.11; EC 4.1.2.13 from Ignicoccus hospitalis
fbp / A8A9E4: fructose-1,6-bisphosphate aldolase/phosphatase (EC 4.1.2.13; EC 3.1.3.11) from Ignicoccus hospitalis

66% id,
95% cov

FBPAP_METTM / D9PUH5: Fructose-1,6-bisphosphate aldolase/phosphatase; FBP A/P; FBP aldolase/phosphatase; EC 3.1.3.11; EC 4.1.2.13 from Methanothermobacter marburgensis

61% id,
100% cov

More...

DESAC_RS03235 Desac_0652 WP_218915705.1: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase
is similar to:
PaperBLAST

aroA' / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase monomer (EC 4.1.2.13; EC 2.2.1.10) from Methanocaldococcus jannaschii

60% id,
95% cov

fba / P58314: fructose-1,6-bisphosphate aldolase subunit (EC 4.1.2.13) from Pyrococcus furiosus

36% id,
97% cov

ALF1_HALS3 / B0R3Y0: Fructose-bisphosphate aldolase class 1; Fructose-bisphosphate aldolase class I; FBP aldolase; EC 4.1.2.13 from Halobacterium salinarum

34% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory