Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacca acetoxidans DSM 11109 (GCF_000195295.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfobacca acetoxidans DSM 11109, or try another query

thrC DESAC_RS01620 Desac_0331 WP_013705335.1: threonine synthase
is similar to:
PaperBLAST

DvMF_1945: threonine synthase (EC 4.2.3.1) from Desulfovibrio vulgaris

59% id,
98% cov

THRC_METAC / Q8TQD4: Threonine synthase; TS; EC 4.2.3.1 from Methanosarcina acetivorans
GB|AAM05023.1: threonine synthase; EC 4.2.3.1 from Methanosarcina acetivorans

34% id,
91% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

34% id,
91% cov

More...

ilvA DESAC_RS04655 Desac_0938 WP_013705921.1: threonine ammonia-lyase
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

28% id,
87% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

27% id,
84% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

27% id,
82% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory