Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacca acetoxidans DSM 11109 (GCF_000195295.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfobacca acetoxidans DSM 11109, or try another query

tpiA DESAC_RS16645 Desac_1975 WP_013706917.1: triose-phosphate isomerase
is similar to:		 PaperBLAST

TPIS_GEOSE / P00943: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Geobacillus stearothermophilus
P00943: triose-phosphate isomerase (EC 5.3.1.1) from Geobacillus stearothermophilus

 48% id,
99% cov

TPIS_CLOPE / Q8XKU1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Clostridium perfringens

 48% id,
99% cov

TPIS_THET8 / Q5SJR1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermus thermophilus

 48% id,
100% cov

More...

DESAC_RS16640 Desac_1974 WP_013706916.1: phosphoglycerate kinase
is similar to:		 PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

 48% id,
60% cov

DESAC_RS05130 Desac_1036 WP_013706014.1: glutamate synthase-related protein
is similar to:		 PaperBLAST

Q97VM8: triose-phosphate isomerase (EC 5.3.1.1) from Saccharolobus solfataricus

 37% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory