Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacca acetoxidans DSM 11109 (GCF_000195295.1)

Found 21 curated entries in PaperBLAST's database that match '6.3.4.5' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfobacca acetoxidans DSM 11109, or try another query

DESAC_RS12360 Desac_2482 WP_013707412.1: argininosuccinate synthase
is similar to:
PaperBLAST

ASSY_THET8 / P59846: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermus thermophilus

68% id,
99% cov

ASSY_THEMA / Q9X2A1: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermotoga maritima

53% id,
97% cov

ASSY_RAT / P09034: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Rattus norvegicus

51% id,
97% cov

More...

mnmA DESAC_RS10200 Desac_2048 WP_013706986.1: tRNA 2-thiouridine(34) synthase MnmA
is similar to:
PaperBLAST

Q2Z0F6: argininosuccinate synthase (EC 6.3.4.5) from Agaricus bisporus

27% id,
28% cov

ARG1: argininosuccinate synthase; EC 6.3.4.5 from Candida albicans

33% id,
16% cov

ASSY_YEAST / P22768: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Saccharomyces cerevisiae

31% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory