Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacca acetoxidans DSM 11109 (GCF_000195295.1)

Found 3 curated entries in PaperBLAST's database that match 'homoaconitase large subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfobacca acetoxidans DSM 11109, or try another query

leuC DESAC_RS12565 Desac_2525 WP_013707452.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

44% id,
99% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

41% id,
98% cov

DESAC_RS07630 Desac_1531 WP_013706496.1: aconitate hydratase
is similar to:
PaperBLAST

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

35% id,
98% cov

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

33% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory