Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.23' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

hisD AVA_RS04335 Ava_0855 WP_011317709.1: histidinol dehydrogenase
is similar to:
PaperBLAST

Q8G2R2: histidinol dehydrogenase (EC 1.1.1.23) from Brucella suis

55% id,
100% cov

HISX_ECOLI / P06988: Histidinol dehydrogenase; HDH; EC 1.1.1.23 from Escherichia coli
hisD / P06988: histidinal/histidinol dehydrogenase (EC 1.1.1.23) from Escherichia coli

41% id,
96% cov

HISX_SALTY / P10370: Histidinol dehydrogenase; HDH; EC 1.1.1.23 from Salmonella typhimurium

41% id,
94% cov

More...

hisD AVA_RS21305 Ava_4204 WP_011320885.1: histidinol dehydrogenase
is similar to:
PaperBLAST

Q8G2R2: histidinol dehydrogenase (EC 1.1.1.23) from Brucella suis

49% id,
93% cov

HISX_MYCTU / P9WNW9: Histidinol dehydrogenase; HDH; EC 1.1.1.23 from Mycobacterium tuberculosis
P9WNW9: histidinol dehydrogenase (EC 1.1.1.23) from Mycobacterium tuberculosis

44% id,
95% cov

HISX_ECOLI / P06988: Histidinol dehydrogenase; HDH; EC 1.1.1.23 from Escherichia coli
hisD / P06988: histidinal/histidinol dehydrogenase (EC 1.1.1.23) from Escherichia coli

40% id,
96% cov

More...

hisIE AVA_RS24950 Ava_4918 WP_011321574.1: bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

34% id,
23% cov

A1BPP9: histidinol dehydrogenase (EC 1.1.1.23) from Geotrichum candidum

35% id,
21% cov

hisI AVA_RS27160 Ava_B0230 WP_011316524.1: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

A1BPP9: histidinol dehydrogenase (EC 1.1.1.23) from Geotrichum candidum

36% id,
12% cov

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

40% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory