Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.31' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

AVA_RS16235 Ava_3206 WP_041456268.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

Q9SUC0: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Arabidopsis thaliana

24% id,
86% cov

gnd AVA_RS28690 Ava_C0152 WP_011316750.1: decarboxylating 6-phosphogluconate dehydrogenase
is similar to:
PaperBLAST

Psest_2438: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas stutzeri

29% id,
66% cov

AO353_05985: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

25% id,
74% cov

PfGW456L13_5145: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

28% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory