Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 10 curated entries in PaperBLAST's database that match '1.14.13.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

AVA_RS10000 Ava_1981 WP_011318774.1: cytochrome P450
is similar to:
PaperBLAST

bmp12 / A0A1S6M1N0: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Hormoscilla spongeliae

53% id,
97% cov

AVA_RS10640 Ava_2103 WP_011318892.1: cytochrome P450
is similar to:
PaperBLAST

bmp12 / A0A1S6M1N0: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Hormoscilla spongeliae

46% id,
99% cov

AVA_RS19885 Ava_3921 WP_011320615.1: cytochrome P450
is similar to:
PaperBLAST

bmp12 / A0A1S6M1N0: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Hormoscilla spongeliae

43% id,
96% cov

AVA_RS20605 Ava_4063 WP_011320751.1: cytochrome P450
is similar to:
PaperBLAST

bmp12 / A0A1S6M1N0: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Hormoscilla spongeliae

24% id,
84% cov

AVA_RS06205 Ava_1226 WP_011318069.1: FAD-dependent hydroxylase
is similar to:
PaperBLAST

Pf6N2E2_2914: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas fluorescens

25% id,
54% cov

pobA / Q9R9T1: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas putida
Q9R9T1: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas putida

27% id,
39% cov

pobA / F2JUE7: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Marinomonas mediterranea

30% id,
22% cov

chlP AVA_RS07585 Ava_1497 WP_041456674.1: geranylgeranyl reductase
is similar to:
PaperBLAST

PHHY_PSEAE / P20586: p-hydroxybenzoate hydroxylase; PHBH; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas aeruginosa

25% id,
41% cov

PHHY_PSEFL / P00438: p-hydroxybenzoate hydroxylase; PHBH; PHBHase; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas fluorescens
pobA / P00438: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas fluorescens

25% id,
41% cov

AVA_RS04390 Ava_0867 WP_011317721.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Pf6N2E2_2914: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas fluorescens

36% id,
15% cov

AVA_RS10355 Ava_2049 WP_011318841.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Pf6N2E2_2914: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas fluorescens

39% id,
12% cov

pobA / F2JUE7: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Marinomonas mediterranea

42% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory