Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 9 curated entries in PaperBLAST's database that match '1.2.1.18' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

AVA_RS07875 Ava_1554 WP_011318370.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

37% id,
97% cov

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

36% id,
97% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

35% id,
97% cov

More...

pruA AVA_RS14900 Ava_2942 WP_011319687.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

35% id,
100% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

33% id,
97% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

33% id,
94% cov

More...

AVA_RS17895 Ava_3534 WP_011320250.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

30% id,
91% cov

AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens

29% id,
91% cov

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

27% id,
91% cov

More...

AVA_RS18330 Ava_3615 WP_011320326.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

25% id,
88% cov

ALD6 / A0A1D8PM94: malonate semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.18) from Candida albicans

26% id,
77% cov

Q9EQ20: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Mus musculus

23% id,
82% cov

More...

AVA_RS11425 Ava_2258 WP_011319043.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

23% id,
90% cov

Q9EQ20: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Mus musculus

25% id,
84% cov

ALD6 / A0A1D8PM94: malonate semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.18) from Candida albicans

23% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory