Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 5 curated entries in PaperBLAST's database that match '1.5.1.50' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

fabG AVA_RS19075 Ava_3764 WP_011320463.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

29% id,
90% cov

AVA_RS15015 Ava_2965 WP_011319710.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

26% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1138438-1139322 (frame +1) on NC_007413.1 Trichormus variabilis ATCC 29413, complete sequence
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum
Also see hits to annotated proteins above

25% id,
72% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory