Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 52 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

pruA AVA_RS14900 Ava_2942 WP_011319687.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

34% id,
94% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

33% id,
91% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

33% id,
91% cov

More...

thiO AVA_RS16300 Ava_3219 WP_011319951.1: glycine oxidase ThiO
is similar to:
PaperBLAST

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

26% id,
96% cov

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

25% id,
96% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

25% id,
95% cov

AVA_RS07875 Ava_1554 WP_011318370.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

31% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

30% id,
44% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

30% id,
44% cov

More...

AVA_RS17895 Ava_3534 WP_011320250.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

27% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
42% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

28% id,
42% cov

More...

AVA_RS11425 Ava_2258 WP_011319043.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

28% id,
42% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

26% id,
42% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

26% id,
42% cov

More...

AVA_RS00180 Ava_0036 WP_011316934.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

25% id,
27% cov

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

35% id,
13% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

47% id,
9% cov

AVA_RS25410 Ava_5007 WP_011321657.1: FAD-binding protein
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

51% id,
9% cov

zds AVA_RS01010 Ava_0200 WP_011317089.1: 9,9'-di-cis-zeta-carotene desaturase
is similar to:
PaperBLAST

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

46% id,
10% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

46% id,
10% cov

AVA_RS25370 Ava_5000 WP_011321650.1: FAD-binding protein
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

56% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3645496-3648504 (frame +1) on NC_007413.1 Trichormus variabilis ATCC 29413, complete sequence
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri
Also see hits to annotated proteins above

33% id,
96% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis
Also see hits to annotated proteins above

33% id,
92% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.
Also see hits to annotated proteins above

33% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory