Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 1 curated entries in PaperBLAST's database that match '2.3.1.182' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

AVA_RS10680 Ava_2111 WP_011318900.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

31% id,
100% cov

nifV AVA_RS04740 Ava_0938 WP_041456624.1: homocitrate synthase
is similar to:
PaperBLAST

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

30% id,
74% cov

nifV AVA_RS20055 Ava_3956 WP_011320648.1: homocitrate synthase
is similar to:
PaperBLAST

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

29% id,
76% cov

nifV AVA_RS20495 Ava_4041 WP_011320730.1: homocitrate synthase
is similar to:
PaperBLAST

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

30% id,
74% cov

cimA AVA_RS16285 Ava_3216 WP_011319948.1: citramalate synthase
is similar to:
PaperBLAST

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

28% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory