Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 38 curated entries in PaperBLAST's database that match '2.3.3.13' as complete word(s).

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

AVA_RS10680 Ava_2111 WP_011318900.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

LEU11_LEPIN / Q8F445: 2-isopropylmalate synthase 1; Alpha-IPM synthase 1; Alpha-isopropylmalate synthase 1; EC 2.3.3.13 from Leptospira interrogans

53% id,
99% cov

LEU1_NEIMB / Q9JZG1: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Neisseria meningitidis
Q9JZG1: 2-isopropylmalate synthase (EC 2.3.3.13) from Neisseria meningitidis

53% id,
97% cov

Q72JC9: 2-isopropylmalate synthase (EC 2.3.3.13) from Thermus thermophilus

52% id,
97% cov

More...

nifV AVA_RS04740 Ava_0938 WP_041456624.1: homocitrate synthase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

47% id,
91% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

37% id,
97% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

36% id,
97% cov

More...

nifV AVA_RS20495 Ava_4041 WP_011320730.1: homocitrate synthase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

46% id,
91% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

36% id,
97% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

34% id,
99% cov

More...

nifV AVA_RS20055 Ava_3956 WP_011320648.1: homocitrate synthase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

46% id,
91% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

35% id,
97% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

34% id,
97% cov

More...

cimA AVA_RS16285 Ava_3216 WP_011319948.1: citramalate synthase
is similar to:
PaperBLAST

Q30DX9: 2-isopropylmalate synthase (EC 2.3.3.13) from Brassica insularis

25% id,
84% cov

LEU12_ARATH / Q9C550: 2-isopropylmalate synthase 2, chloroplastic; 2-isopropylmalate synthase 1; Methylthioalkylmalate synthase-like 3; EC 2.3.3.13 from Arabidopsis thaliana
Q9C550: 2-isopropylmalate synthase (EC 2.3.3.13) from Arabidopsis thaliana

25% id,
83% cov

BT1861: 2-isopropylmalate synthase (EC 2.3.3.13) from Bacteroides thetaiotaomicron

28% id,
72% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory