Curated BLAST
Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)
Found 11 curated entries in PaperBLAST's database that match '2.3.3.21' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Trichormus variabilis ATCC 29413, or try another query
AVA_RS10680 Ava_2111 WP_011318900.1: 2-isopropylmalate synthase is similar to: | PaperBLAST |
CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii | 42% id, 99% cov |
CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans cimA / Q8F3Q1: (R)-citramalate synthase subunit (EC 2.3.3.21) from Leptospira interrogans | 30% id, 100% cov |
B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp. | 28% id, 98% cov |
CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius | 27% id, 98% cov |
DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris | 26% id, 100% cov |
CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens | 24% id, 99% cov |
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cimA AVA_RS16285 Ava_3216 WP_011319948.1: citramalate synthase is similar to: | PaperBLAST |
CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens | 55% id, 62% cov |
DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris | 50% id, 61% cov |
B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp. | 49% id, 61% cov |
CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius | 42% id, 67% cov |
CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii | 34% id, 62% cov |
B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp. | 49% id, 42% cov |
CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens | 52% id, 38% cov |
CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius | 48% id, 41% cov |
DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris | 53% id, 36% cov |
CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans cimA / Q8F3Q1: (R)-citramalate synthase subunit (EC 2.3.3.21) from Leptospira interrogans | 26% id, 64% cov |
CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans cimA / Q8F3Q1: (R)-citramalate synthase subunit (EC 2.3.3.21) from Leptospira interrogans | 24% id, 39% cov |
CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii | 52% id, 9% cov |
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nifV AVA_RS04740 Ava_0938 WP_041456624.1: homocitrate synthase is similar to: | PaperBLAST |
CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii | 42% id, 74% cov |
CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius | 30% id, 69% cov |
B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp. | 29% id, 70% cov |
CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans cimA / Q8F3Q1: (R)-citramalate synthase subunit (EC 2.3.3.21) from Leptospira interrogans | 31% id, 48% cov |
DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris | 32% id, 46% cov |
CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens | 32% id, 41% cov |
CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens | 46% id, 13% cov |
DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris | 32% id, 12% cov |
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nifV AVA_RS20055 Ava_3956 WP_011320648.1: homocitrate synthase is similar to: | PaperBLAST |
CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii | 41% id, 74% cov |
CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius | 30% id, 70% cov |
B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp. | 29% id, 71% cov |
DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris | 29% id, 69% cov |
CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans cimA / Q8F3Q1: (R)-citramalate synthase subunit (EC 2.3.3.21) from Leptospira interrogans | 32% id, 49% cov |
CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens | 32% id, 41% cov |
CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens | 43% id, 10% cov |
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nifV AVA_RS20495 Ava_4041 WP_011320730.1: homocitrate synthase is similar to: | PaperBLAST |
CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii | 43% id, 71% cov |
CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius | 32% id, 69% cov |
B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp. | 31% id, 71% cov |
DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris | 31% id, 69% cov |
CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans cimA / Q8F3Q1: (R)-citramalate synthase subunit (EC 2.3.3.21) from Leptospira interrogans | 28% id, 72% cov |
CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens | 29% id, 66% cov |
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The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory