Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 29 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

glpK AVA_RS24445 Ava_4817 WP_011321475.1: glycerol kinase GlpK
is similar to:
PaperBLAST

BWI76_RS27020: Xylulose kinase (EC 2.7.1.17) from Klebsiella michiganensis

26% id,
94% cov

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

26% id,
91% cov

Q9WXX1: xylulokinase (EC 2.7.1.17) from Thermotoga maritima

27% id,
88% cov

More...

AVA_RS10130 Ava_2006 WP_011318800.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

25% id,
90% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

24% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory