Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 53 curated entries in PaperBLAST's database that match '2.7.1.4' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

AVA_RS14780 Ava_2919 WP_011319667.1: carbohydrate kinase
is similar to:		 PaperBLAST

SCRK1_MAIZE / Q6XZ79: Fructokinase-1; ZmFRK1; EC 2.7.1.4 from Zea mays

 34% id,
96% cov

SCRK1_ORYSI / A2WXV8: Fructokinase-1; Fructokinase I; OsFKI; EC 2.7.1.4 from Oryza sativa

 33% id,
98% cov

SCRK1_ORYSJ / Q0JGZ6: Fructokinase-1; Fructokinase I; OsFKI; EC 2.7.1.4 from Oryza sativa

 33% id,
98% cov

More...

rbsK AVA_RS01255 Ava_0252 WP_011317140.1: ribokinase
is similar to:		 PaperBLAST

SCRK1_ORYSI / A2WXV8: Fructokinase-1; Fructokinase I; OsFKI; EC 2.7.1.4 from Oryza sativa

 30% id,
95% cov

SCRK1_ORYSJ / Q0JGZ6: Fructokinase-1; Fructokinase I; OsFKI; EC 2.7.1.4 from Oryza sativa

 30% id,
95% cov

SCRK2_ORYSI / A2YQL4: Fructokinase-2; Fructokinase II; OsFKII; EC 2.7.1.4 from Oryza sativa
SCRK2_ORYSJ / Q0J8G4: Fructokinase-2; Fructokinase II; OsFKII; EC 2.7.1.4 from Oryza sativa
A2YQL4: fructokinase (EC 2.7.1.4) from Oryza sativa

 32% id,
90% cov

More...

AVA_RS22040 Ava_4339 WP_011321017.1: ROK family protein
is similar to:		 PaperBLAST

MAK_ECOLI / P23917: Fructokinase; D-fructose kinase; Manno(fructo)kinase; EC 2.7.1.4 from Escherichia coli
Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

 26% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2820394-2821350 (frame +1) on NC_007413.1 Trichormus variabilis ATCC 29413, complete sequence
is similar to:		 PaperBLAST

SCRK_BACSU / O05510: Putative fructokinase; Glucomannan utilization protein E; EC 2.7.1.4 from Bacillus subtilis
O05510: fructokinase (EC 2.7.1.4) from Bacillus subtilis

 26% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory