Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 60 curated entries in PaperBLAST's database that match '2.7.2.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

AVA_RS18465 Ava_3642 WP_011320349.1: aspartate kinase
is similar to:
PaperBLAST

P74569: aspartate kinase (EC 2.7.2.4) from Synechocystis sp.

72% id,
100% cov

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

50% id,
99% cov

AKLYS_STUS1 / A4VJB4: Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 from Stutzerimonas stutzeri

50% id,
99% cov

More...

AVA_RS03950 Ava_0783 WP_011317641.1: homoserine dehydrogenase
is similar to:
PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

32% id,
54% cov

proB AVA_RS19295 Ava_3807 WP_011320502.1: glutamate 5-kinase
is similar to:
PaperBLAST

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

28% id,
49% cov

dapG: aspartate kinase 1; EC 2.7.2.4 from Bacillus subtilis

21% id,
61% cov

dapG / Q04795: aspartokinase I (alpha and beta subunits) (EC 2.7.2.4) from Bacillus subtilis

21% id,
61% cov

More...

pyrH AVA_RS03180 Ava_0628 WP_011317499.1: UMP kinase
is similar to:
PaperBLAST

AK_CORFL / P41398: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens
lysC / GB|AAA23293.1: aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens

24% id,
55% cov

AK_CORGL / P26512: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium glutamicum
lysC: aspartate kinase 2; EC 2.7.2.4 from Corynebacterium glutamicum
lysCα / P26512: aspartokinase α subunit (EC 2.7.2.4) from Corynebacterium glutamicum
lysCβ / P26512: aspartokinase β subunit (EC 2.7.2.4) from Corynebacterium glutamicum
P26512: aspartate kinase (EC 2.7.2.4) from Corynebacterium glutamicum

24% id,
55% cov

AK_MYCTU / P9WPX3: Aspartokinase; Aspartate kinase; ASK; EC 2.7.2.4 from Mycobacterium tuberculosis
P9WPX3: aspartate kinase (EC 2.7.2.4) from Mycobacterium tuberculosis

30% id,
29% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory