Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 7 curated entries in PaperBLAST's database that match '4.1.2.5' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

AVA_RS25130 Ava_4955 WP_041457111.1: low specificity L-threonine aldolase
is similar to:
PaperBLAST

Q88R13: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas putida

66% id,
100% cov

AO353_07670: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

66% id,
99% cov

PfGW456L13_1114: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

65% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory