Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 33 curated entries in PaperBLAST's database that match '4.2.1.51' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

pheA AVA_RS06500 Ava_1284 WP_041456041.1: prephenate dehydratase
is similar to:
PaperBLAST

Q8DUV6: prephenate dehydratase (EC 4.2.1.51) from Streptococcus mutans

38% id,
99% cov

PHEA_METJA / Q58054: Prephenate dehydratase; PDT; MjPDT; EC 4.2.1.51 from Methanocaldococcus jannaschii

37% id,
100% cov

Echvi_0123: prephenate and/or arogenate dehydratase (EC 4.2.1.51) from Echinicola vietnamensis

30% id,
96% cov

More...

AVA_RS19700 Ava_3886 WP_011320581.1: ABC transporter permease subunit
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

23% id,
71% cov

AVA_RS22330 Ava_4397 WP_041456419.1: prephenate/arogenate dehydrogenase
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

22% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory