Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

thrC AVA_RS15760 Ava_3117 WP_011319854.1: threonine synthase
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

62% id,
99% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

60% id,
99% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

63% id,
93% cov

More...

thrC AVA_RS25115 Ava_4952 WP_041457108.1: threonine synthase
is similar to:
PaperBLAST

THRC_METAC / Q8TQD4: Threonine synthase; TS; EC 4.2.3.1 from Methanosarcina acetivorans
GB|AAM05023.1: threonine synthase; EC 4.2.3.1 from Methanosarcina acetivorans

40% id,
98% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

38% id,
97% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

37% id,
98% cov

More...

AVA_RS06815 Ava_1347 WP_011318176.1: cysteine synthase A
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

24% id,
82% cov

AVA_RS21065 Ava_4156 WP_011320838.1: cystathionine beta-synthase
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

24% id,
76% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory