Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 17 curated entries in PaperBLAST's database that match '5.3.1.7' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

AVA_RS18070 Ava_3567 WP_011320279.1: AGE family epimerase/isomerase
is similar to:
PaperBLAST

BPHYT_RS02050: D-mannose isomerase (EC 5.3.1.7) from Burkholderia phytofirmans

26% id,
88% cov

MANI_MARM1 / F2JVT6: D-mannose isomerase; MI; EC 5.3.1.7 from Marinomonas mediterranea

26% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory