Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 5 curated entries in PaperBLAST's database that match 'arginosuccinate lyase' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

argH AVA_RS09150 Ava_1807 WP_011318609.1: argininosuccinate lyase
is similar to:
PaperBLAST

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

41% id,
93% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

35% id,
94% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

37% id,
84% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory