Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)

Found 8 curated entries in PaperBLAST's database that match 'anthranilate synthase component I' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Trichormus variabilis ATCC 29413, or try another query

trpE AVA_RS23960 Ava_4721 WP_011321383.1: anthranilate synthase component I
is similar to:
PaperBLAST

trpE / Q08653: anthranilate synthase component I (EC 4.1.3.27) from Thermotoga maritima

47% id,
96% cov

trpE / AAD09116.1: anthranilate synthase component I from Rhodobacter sphaeroides

46% id,
97% cov

trpE / BAC65122.2: anthranilate synthase component I from Burkholderia multivorans

45% id,
97% cov

More...

pabB AVA_RS17560 Ava_3468 WP_041456890.1: aminodeoxychorismate synthase component I
is similar to:
PaperBLAST

trpE / Q08653: anthranilate synthase component I (EC 4.1.3.27) from Thermotoga maritima

35% id,
92% cov

7bvdA / A0QX93: Anthranilate synthase component i (trpe)[mycolicibacterium smegmatis]

34% id,
92% cov

5cwaA / P9WFX2: Structure of anthranilate synthase component i (trpe) from mycobacterium tuberculosis with inhibitor bound

34% id,
92% cov

More...

AVA_RS24820 Ava_4890 WP_011321547.1: anthranilate synthase
is similar to:
PaperBLAST

trpE / Q08653: anthranilate synthase component I (EC 4.1.3.27) from Thermotoga maritima

32% id,
85% cov

TRPE_YEAST / P00899: Anthranilate synthase component 1; Anthranilate synthase component I; EC 4.1.3.27 from Saccharomyces cerevisiae

34% id,
80% cov

trpE / BAC65122.2: anthranilate synthase component I from Burkholderia multivorans

35% id,
74% cov

More...

AVA_RS13325 Ava_2632 WP_011319394.1: isochorismate synthase MenF
is similar to:
PaperBLAST

5cwaA / P9WFX2: Structure of anthranilate synthase component i (trpe) from mycobacterium tuberculosis with inhibitor bound

26% id,
65% cov

trpE / Q08653: anthranilate synthase component I (EC 4.1.3.27) from Thermotoga maritima

29% id,
57% cov

TRPE_YEAST / P00899: Anthranilate synthase component 1; Anthranilate synthase component I; EC 4.1.3.27 from Saccharomyces cerevisiae

26% id,
59% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory