Curated BLAST for Genomes

 

Curated BLAST

Searching in Alicycliphilus denitrificans K601 (GCF_000204645.1)

Found 38 curated entries in PaperBLAST's database that match '2.7.6.1' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Alicycliphilus denitrificans K601, or try another query

ALIDE2_RS04715 Alide2_0945 WP_013517869.1: ribose-phosphate pyrophosphokinase
is similar to:
PaperBLAST

KPRS_ECOLI / P0A717: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Escherichia coli
DnaR / b1207: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli
prs / P0A717: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli
P0A719: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli

65% id,
99% cov

KPRS_SALTY / P0A1V6: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Salmonella typhimurium

65% id,
99% cov

KPRS_BACSU / P14193: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Bacillus subtilis

53% id,
99% cov

More...

ALIDE2_RS16725 Alide2_3373 WP_013722688.1: ribose-phosphate pyrophosphokinase
is similar to:
PaperBLAST

A3MV85: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Pyrobaculum calidifontis

32% id,
94% cov

KPRS_METJA / Q58761: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Methanocaldococcus jannaschii
Q58761: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Methanocaldococcus jannaschii

29% id,
97% cov

Q97Z86: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Saccharolobus solfataricus

32% id,
89% cov

ALIDE2_RS13555 Alide2_2725 WP_013722291.1: ribose-phosphate pyrophosphokinase
is similar to:
PaperBLAST

A3MV85: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Pyrobaculum calidifontis

30% id,
91% cov

KPRS_METJA / Q58761: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Methanocaldococcus jannaschii
Q58761: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Methanocaldococcus jannaschii

27% id,
95% cov

Q97Z86: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Saccharolobus solfataricus

31% id,
82% cov

More...

ALIDE2_RS23435 Alide2_4727 WP_013723303.1: adenine phosphoribosyltransferase
is similar to:
PaperBLAST

KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis

38% id,
32% cov

Q97Z86: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Saccharolobus solfataricus

30% id,
32% cov

A3MV85: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Pyrobaculum calidifontis

32% id,
27% cov

ALIDE2_RS19585 Alide2_3951 WP_013520290.1: ComF family protein
is similar to:
PaperBLAST

A3MV85: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Pyrobaculum calidifontis

33% id,
25% cov

KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis

42% id,
13% cov

purF ALIDE2_RS16915 Alide2_3413 WP_013722718.1: amidophosphoribosyltransferase
is similar to:
PaperBLAST

KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis

27% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory