Curated BLAST for Genomes

 

Curated BLAST

Searching in Alicycliphilus denitrificans K601 (GCF_000204645.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Alicycliphilus denitrificans K601, or try another query

lysA ALIDE2_RS03945 Alide2_0792 WP_013517729.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

54% id,
99% cov

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

43% id,
98% cov

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

42% id,
98% cov

More...

ALIDE2_RS03580 Alide2_0719 WP_013721428.1: pyridoxal-dependent decarboxylase, exosortase A system-associated
is similar to:
PaperBLAST

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

31% id,
93% cov

DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima

31% id,
93% cov

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

31% id,
92% cov

More...

ALIDE2_RS11525 Alide2_2314 WP_013518959.1: aspartate kinase
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

28% id,
45% cov

pyrH ALIDE2_RS17200 Alide2_3468 WP_013518341.1: UMP kinase
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

24% id,
26% cov

proB ALIDE2_RS04450 Alide2_0892 WP_013517816.1: glutamate 5-kinase
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

28% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory