Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylomonas methanica MC09 (GCF_000214665.1)

Found 8 curated entries in PaperBLAST's database that match '2.5.1.73' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylomonas methanica MC09, or try another query

METME_RS06190 Metme_1230 WP_013817923.1: cysteine desulfurase
is similar to:
PaperBLAST

Q8PVS9: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanosarcina mazei

28% id,
41% cov

SPSS1_ARCFU / O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase 1; Sep-tRNA:Cys-tRNA synthase 1; SepCysS 1; EC 2.5.1.73 from Archaeoglobus fulgidus
O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Archaeoglobus fulgidus

26% id,
42% cov

METME_RS15695 Metme_3124 WP_013819727.1: PLP-dependent aminotransferase family protein
is similar to:
PaperBLAST

Q12W26: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcoides burtonii

24% id,
31% cov

METME_RS16560 Metme_3303 WP_013819901.1: aminotransferase class V-fold PLP-dependent enzyme
is similar to:
PaperBLAST

SPSS_METJA / Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase; Sep-tRNA:Cys-tRNA synthase; SepCysS; EC 2.5.1.73 from Methanocaldococcus jannaschii
pscS / Q59072: Sep-tRNA:Cys-tRNA synthase monomer (EC 2.5.1.73) from Methanocaldococcus jannaschii
Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanocaldococcus jannaschii

26% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory