Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylomonas methanica MC09 (GCF_000214665.1)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.48' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methylomonas methanica MC09, or try another query

glyA METME_RS13695 Metme_2717 WP_013819337.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

72% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

65% id,
95% cov

METME_RS02365 Metme_0476 WP_013817192.1: low specificity L-threonine aldolase
is similar to:
PaperBLAST

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

62% id,
99% cov

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

37% id,
95% cov

O13427: low-specificity L-threonine aldolase (EC 4.1.2.48) from Candida albicans

29% id,
60% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory