Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylomonas methanica MC09 (GCF_000214665.1)

Found 1 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methylomonas methanica MC09, or try another query

carB METME_RS16525 Metme_3296 WP_013819894.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

45% id,
99% cov

METME_RS20035 Metme_3991 WP_013820560.1: ATP-grasp domain-containing protein
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

21% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory