Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Thiomicrospira cyclica ALM1 (GCF_000214825.1)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thiomicrospira cyclica ALM1, or try another query

THICY_RS03705 Thicy_0719 WP_013835270.1: homoserine dehydrogenase is similar to:	PaperBLAST
DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae	49% id, 100% cov
Ga0059261_2711: homoserine dehydrogenase (EC 1.1.1.3) from Sphingomonas koreensis	41% id, 97% cov
DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris	42% id, 94% cov
DHOM_BACSU / P19582: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Bacillus subtilis P19582: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus subtilis	40% id, 96% cov
P46806: homoserine dehydrogenase (EC 1.1.1.3) from Mycobacterium leprae	39% id, 98% cov
D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus	39% id, 98% cov
Q56R01: homoserine dehydrogenase (EC 1.1.1.3) from Streptomyces clavuligerus	38% id, 99% cov
Q5SL04: homoserine dehydrogenase (EC 1.1.1.3) from Thermus thermophilus	38% id, 97% cov
DHOM_CORGL / P08499: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Corynebacterium glutamicum P08499: homoserine dehydrogenase (EC 1.1.1.3) from Corynebacterium glutamicum	39% id, 92% cov
A0A0H2WVX4: homoserine dehydrogenase (EC 1.1.1.3) from Staphylococcus aureus	38% id, 94% cov
DHOM_LACLC / P52985: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Lactococcus lactis	36% id, 93% cov
D8WXQ2: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus	38% id, 80% cov
F9VNG5: homoserine dehydrogenase (EC 1.1.1.3) from Sulfurisphaera tokodaii	37% id, 82% cov
O58802: homoserine dehydrogenase (EC 1.1.1.3) from Pyrococcus horikoshii	29% id, 96% cov
DHOM_EMENI / Q5B998: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Emericella nidulans AN2882: homoserine dehydrogenase; EC 1.1.1.3 from Emericella nidulans	28% id, 97% cov
Q5AIA2: homoserine dehydrogenase (EC 1.1.1.3) from Candida albicans	31% id, 64% cov
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	38% id, 42% cov
C1G1C3: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides brasiliensis	32% id, 43% cov
C1GTZ6: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides lutzii	31% id, 43% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	25% id, 39% cov
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THICY_RS02560 Thicy_0505 WP_013835059.1: aspartate kinase is similar to:	PaperBLAST
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	43% id, 54% cov
Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis	28% id, 52% cov
BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron	30% id, 46% cov
CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.	30% id, 45% cov
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	32% id, 42% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	26% id, 45% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	26% id, 45% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	26% id, 44% cov
MetM / b3940: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli metL / P00562: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli	25% id, 44% cov
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pyrH THICY_RS04950 Thicy_0969 WP_041435377.1: UMP kinase is similar to:	PaperBLAST
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	22% id, 24% cov
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	31% id, 17% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	24% id, 20% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	24% id, 19% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	23% id, 19% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory