Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrospira cyclica ALM1 (GCF_000214825.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thiomicrospira cyclica ALM1, or try another query

lysA THICY_RS00790 Thicy_0151 WP_013834711.1: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

 62% id,
99% cov

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

 44% id,
99% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

 41% id,
99% cov

More...

THICY_RS02560 Thicy_0505 WP_013835059.1: aspartate kinase
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 28% id,
33% cov

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 35% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory