Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrospira cyclica ALM1 (GCF_000214825.1)

Found 6 curated entries in PaperBLAST's database that match 'hisH' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Thiomicrospira cyclica ALM1, or try another query

hisH THICY_RS07800 Thicy_1537 WP_013836070.1: imidazole glycerol phosphate synthase subunit HisH
is similar to:
PaperBLAST

HIS5_ECOLI / P60595: Imidazole glycerol phosphate synthase subunit HisH; IGP synthase glutaminase subunit; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH; EC 4.3.2.10; EC 3.5.1.2 from Escherichia coli
HisH / b2023: imidazole glycerol phosphate synthase subunit HisH (EC 4.3.2.10) from Escherichia coli
hisH / P60595: imidazole glycerol phosphate synthase subunit HisH (EC 4.3.2.10) from Escherichia coli

37% id,
98% cov

HIS5_MYCBO / P59957: Imidazole glycerol phosphate synthase subunit HisH; IGP synthase glutaminase subunit; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH; EC 4.3.2.10; EC 3.5.1.2 from Mycobacterium bovis

35% id,
99% cov

HIS5_THET8 / Q7SIC0: Imidazole glycerol phosphate synthase subunit HisH; IGP synthase glutaminase subunit; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH; EC 4.3.2.10; EC 3.5.1.2 from Thermus thermophilus

36% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory