Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulforamulus ruminis DSM 2154 (GCF_000215085.1)

Found 60 curated entries in PaperBLAST's database that match '1.1.1.85' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulforamulus ruminis DSM 2154, or try another query

leuB DESRU_RS01895 Desru_0364 WP_013840436.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

leuB / P24015: β-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) from Leptospira interrogans
P24015: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Leptospira interrogans

58% id,
99% cov

Q00412: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Arthrospira platensis

60% id,
97% cov

LEU3_ACIFR / Q56268: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Acidithiobacillus ferrooxidans
Q56268: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Acidithiobacillus ferrooxidans

58% id,
99% cov

More...

DESRU_RS06690 Desru_1310 WP_013841355.1: isocitrate dehydrogenase (NAD(+))
is similar to:
PaperBLAST

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC 1.1.1.85; EC 1.1.1.n5; EC 1.1.1.83 from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) from Methanocaldococcus jannaschii

46% id,
99% cov

LEU3_SULTO / P50455: 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; Beta-IPM dehydrogenase; EC 1.1.1.85 from Sulfurisphaera tokodaii
P50455: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Sulfurisphaera tokodaii

45% id,
100% cov

Q4JB37: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Sulfolobus acidocaldarius

45% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory