Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulforamulus ruminis DSM 2154 (GCF_000215085.1)

Found 15 curated entries in PaperBLAST's database that match '2.6.1.27' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Desulforamulus ruminis DSM 2154, or try another query

DESRU_RS08430 Desru_1652 WP_013841684.1: branched-chain amino acid aminotransferase
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

30% id,
95% cov

DESRU_RS02800 Desru_0552 WP_013840613.1: PLP-dependent aminotransferase family protein
is similar to:
PaperBLAST

A0A0D1E3F3: tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis

31% id,
87% cov

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

29% id,
92% cov

DESRU_RS11725 Desru_2322 WP_013842323.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

ISS1_ARATH / Q9C969: Aromatic aminotransferase ISS1; Methionine aminotransferase ISS1; Phenylalanine aminotransferase ISS1; Protein INDOLE SEVERE SENSITIVE 1; Protein REVERSAL OF SAV3 PHENOTYPE 1; Tryptophan aminotransferase ISS1; Tyrosine aminotransferase ISS1; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.88 from Arabidopsis thaliana
ISS1 / Q9C969: aromatic aminotransferase ISS1 (EC 2.6.1.27) from Arabidopsis thaliana

26% id,
97% cov

DESRU_RS02885 Desru_0569 WP_013840629.1: PLP-dependent aminotransferase family protein
is similar to:
PaperBLAST

A0A0D1E3F3: tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis

26% id,
95% cov

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

28% id,
73% cov

DESRU_RS18780 Desru_3729 WP_013843674.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

ISS1_ARATH / Q9C969: Aromatic aminotransferase ISS1; Methionine aminotransferase ISS1; Phenylalanine aminotransferase ISS1; Protein INDOLE SEVERE SENSITIVE 1; Protein REVERSAL OF SAV3 PHENOTYPE 1; Tryptophan aminotransferase ISS1; Tyrosine aminotransferase ISS1; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.88 from Arabidopsis thaliana
ISS1 / Q9C969: aromatic aminotransferase ISS1 (EC 2.6.1.27) from Arabidopsis thaliana

25% id,
92% cov

DESRU_RS09910 Desru_1950 WP_013841969.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

A0A0D1E3F3: tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis

31% id,
66% cov

DESRU_RS09290 Desru_1826 WP_013841853.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

TAR2_ARATH / Q94A02: Tryptophan aminotransferase-related protein 2; EC 2.6.1.27; EC 2.6.1.99 from Arabidopsis thaliana

22% id,
67% cov

DESRU_RS21405 WP_274376995.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

A0A0D1E3F3: tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis

24% id,
26% cov

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

35% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory