Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulforamulus ruminis DSM 2154 (GCF_000215085.1)

Found 41 curated entries in PaperBLAST's database that match '2.7.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulforamulus ruminis DSM 2154, or try another query

DESRU_RS03105 Desru_0609 WP_013840668.1: hexokinase
is similar to:
PaperBLAST

hxk1 / RF|NP_592948.1: hexokinase 1; EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.4; EC 2.7.1.7 from Schizosaccharomyces pombe

34% id,
91% cov

hxk2 / RF|NP_593865.1: hexokinase 2; EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.4; EC 2.7.1.7 from Schizosaccharomyces pombe

31% id,
97% cov

HXKG_YEAST / P17709: Glucokinase-1; Glucose kinase 1; GLK-1; EC 2.7.1.2 from Saccharomyces cerevisiae

31% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

639291-640652 (frame -1) on NC_015589.1 Desulforamulus ruminis DSM 2154, complete sequence
is similar to:
PaperBLAST

hxk1 / RF|NP_592948.1: hexokinase 1; EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.4; EC 2.7.1.7 from Schizosaccharomyces pombe
Also see hits to annotated proteins above

34% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory