Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulforamulus ruminis DSM 2154 (GCF_000215085.1)

Found 11 curated entries in PaperBLAST's database that match '4.2.1.90' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Desulforamulus ruminis DSM 2154, or try another query

DESRU_RS08640 Desru_1695 WP_013841725.1: UxaA family hydrolase
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

33% id,
92% cov

DESRU_RS00465 Desru_0087 WP_013840170.1: UxaA family hydrolase
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

33% id,
92% cov

DESRU_RS08670 Desru_1701 WP_013840660.1: UxaA family hydrolase
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

33% id,
92% cov

DESRU_RS12855 Desru_2534 WP_013842518.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp.

24% id,
91% cov

DESRU_RS08665 Desru_1700 WP_013840169.1: UxaA family hydrolase
is similar to:
PaperBLAST

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

32% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory