Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulforamulus ruminis DSM 2154 (GCF_000215085.1)

Found 3 curated entries in PaperBLAST's database that match 'glutamyl-tRNA(Gln) amidotransferase subunit C' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulforamulus ruminis DSM 2154, or try another query

gatC DESRU_RS06660 Desru_1304 WP_013841349.1: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
is similar to:
PaperBLAST

GATC_STRP6 / Q5XAC6: Glutamyl-tRNA(Gln) amidotransferase subunit C; Glu-ADT subunit C; EC 6.3.5.- from Streptococcus pyogenes

37% id,
92% cov

GATC_ARATH / F4JV80: Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Glu-AdT subunit C; EC 6.3.5.- from Arabidopsis thaliana

25% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory