Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermophagus xiamenensis HS1 (GCF_000220155.1)

Found 18 curated entries in PaperBLAST's database that match '3.5.1.18' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thermophagus xiamenensis HS1, or try another query

GQW_RS0102470 WP_044138386.1: M20 family metallopeptidase
is similar to:
PaperBLAST

Echvi_1427: putative N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) from Echinicola vietnamensis

54% id,
99% cov

GQW_RS0106820 WP_010527259.1: M20 family metallo-hydrolase
is similar to:
PaperBLAST

DAPE_NEIMB / Q9JYL2: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Neisseria meningitidis
Q9JYL2: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Neisseria meningitidis

24% id,
97% cov

GQW_RS0109630 WP_010527757.1: dipeptidase
is similar to:
PaperBLAST

DAPE_VIBCH / Q9KQ52: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Vibrio cholerae
Q9KQ52: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Vibrio cholerae

30% id,
45% cov

DAPE_NEIMB / Q9JYL2: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Neisseria meningitidis
Q9JYL2: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Neisseria meningitidis

28% id,
44% cov

DAPE_HELPY / O25002: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Helicobacter pylori
O25002: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Helicobacter pylori

30% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory