Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermophagus xiamenensis HS1 (GCF_000220155.1)

Found 11 curated entries in PaperBLAST's database that match '4.1.1.48' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thermophagus xiamenensis HS1, or try another query

trpC GQW_RS0107180 WP_010527322.1: indole-3-glycerol phosphate synthase TrpC
is similar to:
PaperBLAST

trpC / Q56319: indole-3-glycerol phosphate synthase (EC 4.1.1.48) from Thermotoga maritima

37% id,
96% cov

P84126: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermus thermophilus

37% id,
95% cov

trpC / Q9YGB5: indole-3-glycerol phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis
Q9YGB5: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis

33% id,
100% cov

More...

GQW_RS0107190 WP_010527324.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

42% id,
38% cov

GQW_RS0107175 WP_237706116.1: phosphoribosylanthranilate isomerase
is similar to:
PaperBLAST

TrpC / b1262: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
trpC / P00909: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli

32% id,
37% cov

carA GQW_RS0106840 WP_029626556.1: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

24% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

107360-107941 (frame -1) on NZ_AFSL01000040.1 Thermophagus xiamenensis strain HS1 Contig40, whole genome shotgun sequence
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

42% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory