Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermophagus xiamenensis HS1 (GCF_000220155.1)

Found 6 curated entries in PaperBLAST's database that match 'hisF' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Thermophagus xiamenensis HS1, or try another query

hisF GQW_RS0107125 WP_010527312.1: imidazole glycerol phosphate synthase subunit HisF
is similar to:
PaperBLAST

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima

55% id,
98% cov

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

53% id,
98% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

51% id,
99% cov

More...

hisA GQW_RS0107140 WP_010527314.1: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

24% id,
95% cov

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

24% id,
95% cov

HIS6_ECOLI / P60664: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Escherichia coli
HisF / b2025: imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli
hisF / P60664: imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli

21% id,
96% cov

GQW_RS0107455 WP_044138619.1: nitronate monooxygenase
is similar to:
PaperBLAST

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima

28% id,
43% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

30% id,
29% cov

GQW_RS0112390 WP_010528237.1: dihydroorotate dehydrogenase
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

31% id,
34% cov

GQW_RS0105570 WP_237706103.1: geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

34% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory