Curated BLAST for Genomes

 

Curated BLAST

Searching in Pyrolobus fumarii 1A (GCF_000223395.1)

Found 52 curated entries in PaperBLAST's database that match '2.5.1.19' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pyrolobus fumarii 1A, or try another query

PYRFU_RS00635 Pyrfu_0119 WP_014025668.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

B8CWX4: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Halothermothrix orenii

24% id,
96% cov

F5A7Q0: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Bacillus cereus

24% id,
96% cov

aroE / P20691: 5-enolpyruvoylshikimate-3-phosphate synthase (EC 2.5.1.19) from Bacillus subtilis

24% id,
96% cov

More...

PYRFU_RS07225 Pyrfu_1469 WP_244403925.1: 3-dehydroquinate synthase family protein
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

32% id,
23% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

31% id,
21% cov

aroE PYRFU_RS03905 Pyrfu_0793 WP_014026339.1: shikimate dehydrogenase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

27% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory