Curated BLAST for Genomes

 

Curated BLAST

Searching in Pyrolobus fumarii 1A (GCF_000223395.1)

Found 15 curated entries in PaperBLAST's database that match '2.6.1.27' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pyrolobus fumarii 1A, or try another query

PYRFU_RS08035 Pyrfu_1633 WP_244403844.1: PLP-dependent aminotransferase family protein
is similar to:
PaperBLAST

A0A0D1E3F3: tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis

32% id,
90% cov

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

30% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory