Curated BLAST for Genomes

 

Curated BLAST

Searching in Pyrolobus fumarii 1A (GCF_000223395.1)

Found 11 curated entries in PaperBLAST's database that match '4.1.1.48' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pyrolobus fumarii 1A, or try another query

PYRFU_RS06835 Pyrfu_1393 WP_014026928.1: indole-3-glycerol-phosphate synthase
is similar to:
PaperBLAST

trpC / Q56319: indole-3-glycerol phosphate synthase (EC 4.1.1.48) from Thermotoga maritima

33% id,
88% cov

PYRFU_RS05150 Pyrfu_1035 WP_014026580.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

42% id,
38% cov

PYRFU_RS08605 Pyrfu_1752 WP_014027283.1: GMP synthase subunit A
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

28% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory