Curated BLAST for Genomes

 

Curated BLAST

Searching in Pyrolobus fumarii 1A (GCF_000223395.1)

Found 60 curated entries in PaperBLAST's database that match 'Serine hydroxymethyltransferase' as complete word(s).

These curated entries have 48 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pyrolobus fumarii 1A, or try another query

glyA PYRFU_RS07375 Pyrfu_1499 WP_014027034.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_SACS2 / Q9UWT5: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Saccharolobus solfataricus

67% id,
96% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

49% id,
96% cov

GLYA_METTH / O27433: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Methanothermobacter thermautotrophicus

47% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory