Curated BLAST for Genomes

 

Curated BLAST

Searching in Pyrolobus fumarii 1A (GCF_000223395.1)

Found 22 curated entries in PaperBLAST's database that match 'argininosuccinate lyase' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pyrolobus fumarii 1A, or try another query

PYRFU_RS03710 Pyrfu_0753 WP_244403893.1: lyase family protein
is similar to:
PaperBLAST

2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine

35% id,
83% cov

1tj7B / P11447: Structure determination and refinement at 2.44 a resolution of argininosuccinate lyase from e. Coli

29% id,
93% cov

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

29% id,
92% cov

More...

purB PYRFU_RS04310 Pyrfu_0867 WP_014026413.1: adenylosuccinate lyase
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

24% id,
85% cov

argH / CAA88927.2: argininosuccinate lyase from Streptomyces clavuligerus

27% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory