Curated BLAST for Genomes

 

Curated BLAST

Searching in Lentibacillus jeotgali Grbi (GCF_000224785.1)

Found 39 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Lentibacillus jeotgali Grbi, or try another query

ON01_RS01235 LGRBI_RS0101305 WP_010529189.1: homoserine dehydrogenase
is similar to:
PaperBLAST

D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus

61% id,
99% cov

DHOM_BACSU / P19582: Homoserine dehydrogenase; HDH; HSD; EC 1.1.1.3 from Bacillus subtilis
P19582: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus subtilis

55% id,
99% cov

A0A0H2WVX4: homoserine dehydrogenase (EC 1.1.1.3) from Staphylococcus aureus

40% id,
99% cov

More...

ON01_RS10040 LGRBI_RS0110740 WP_010530910.1: aspartate kinase
is similar to:
PaperBLAST

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

30% id,
56% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

29% id,
56% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

28% id,
10% cov

More...

dapG ON01_RS08880 LGRBI_RS0109525 WP_010530678.1: aspartate kinase
is similar to:
PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

29% id,
54% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

32% id,
44% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

32% id,
43% cov

More...

ON01_RS13970 LGRBI_RS0114860 WP_010531688.1: SAF domain-containing protein
is similar to:
PaperBLAST

DHOM_BACSU / P19582: Homoserine dehydrogenase; HDH; HSD; EC 1.1.1.3 from Bacillus subtilis
P19582: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus subtilis

27% id,
36% cov

D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus

26% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory