Curated BLAST for Genomes

 

Curated BLAST

Searching in Lentibacillus jeotgali Grbi (GCF_000224785.1)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Lentibacillus jeotgali Grbi, or try another query

argF ON01_RS16960 LGRBI_RS0118035 WP_010532213.1: ornithine carbamoyltransferase
is similar to:
PaperBLAST

argF / P18186: ArgF (EC 2.1.3.3) from Bacillus subtilis

59% id,
96% cov

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

54% id,
98% cov

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

54% id,
97% cov

More...

ON01_RS07805 LGRBI_RS0108400 WP_010530471.1: aspartate carbamoyltransferase catalytic subunit
is similar to:
PaperBLAST

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

30% id,
96% cov

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

29% id,
97% cov

OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum
arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum
Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum

27% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory