Curated BLAST for Genomes

 

Curated BLAST

Searching in Lentibacillus jeotgali Grbi (GCF_000224785.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Lentibacillus jeotgali Grbi, or try another query

lysA ON01_RS09805 LGRBI_RS0110495 WP_010530863.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis

62% id,
97% cov

DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus

45% id,
98% cov

DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum
P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum

41% id,
95% cov

More...

dapG ON01_RS08880 LGRBI_RS0109525 WP_010530678.1: aspartate kinase
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

28% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory