Curated BLAST for Genomes

 

Curated BLAST

Searching in Lentibacillus jeotgali Grbi (GCF_000224785.1)

Found 25 curated entries in PaperBLAST's database that match 'sucrose hydrolase' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Lentibacillus jeotgali Grbi, or try another query

ON01_RS14395 LGRBI_RS0115315 WP_010531774.1: sucrose-6-phosphate hydrolase
is similar to:		 PaperBLAST

AAP79503.1: sucrose hydrolase (CscA) (EC 3.2.1.26)

 38% id,
97% cov

scrB / Q9ZHJ7: sucrose hydrolase from Clostridium beijerinckii

 37% id,
96% cov

INV6_ARATH / Q8W4S6: Beta-fructofuranosidase, insoluble isoenzyme CWINV6; 6 and 1-fructan exohydrolase; 6&1-FEH; Cell wall beta-fructosidase 6; Cell wall invertase 6; AtcwINV6; Sucrose hydrolase 6; EC 3.2.1.80 from Arabidopsis thaliana

 32% id,
62% cov

More...

treC ON01_RS02165 LGRBI_RS0102295 WP_010529372.1: alpha,alpha-phosphotrehalase
is similar to:		 PaperBLAST

6lgaA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase

 45% id,
39% cov

6lgaA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase

 28% id,
52% cov

AAM42629.1: sucrose hydrolase (SuxB;XCC3359) (EC 3.2.1.-)

 30% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

321509-323191 (frame +2) on NZ_AGAV01000003.1 Lentibacillus jeotgali strain Grbi contig003, whole genome shotgun sequence
is similar to:		 PaperBLAST

6lgaA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase
Also see hits to annotated proteins above

 45% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory