Curated BLAST for Genomes

 

Curated BLAST

Searching in Collinsella tanakaei YIT 12063 (GCF_000225705.1)

Found 11 curated entries in PaperBLAST's database that match '1.1.1.26' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Collinsella tanakaei YIT 12063, or try another query

HMPREF9452_RS05340 HMPREF9452_01073 WP_009141108.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

GYAR_THELN / Q9C4M5: Glyoxylate reductase; EC 1.1.1.26 from Thermococcus litoralis
Q9C4M5: glyoxylate reductase (EC 1.1.1.26) from Thermococcus litoralis

40% id,
88% cov

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

33% id,
86% cov

GOR1_YEAST / P53839: Glyoxylate reductase 1; EC 1.1.1.26; EC 1.1.1.79; EC 1.1.1.81 from Saccharomyces cerevisiae
GOR1 / P53839: glyoxylate reductase 1 (EC 1.1.1.26) from Saccharomyces cerevisiae

32% id,
74% cov

More...

HMPREF9452_RS08490 HMPREF9452_01695 WP_009141729.1: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

GYAR_THELN / Q9C4M5: Glyoxylate reductase; EC 1.1.1.26 from Thermococcus litoralis
Q9C4M5: glyoxylate reductase (EC 1.1.1.26) from Thermococcus litoralis

30% id,
95% cov

Q9UBQ7: glyoxylate reductase (EC 1.1.1.26); glyoxylate reductase (NADP+) (EC 1.1.1.79); hydroxypyruvate reductase (EC 1.1.1.81) from Homo sapiens

27% id,
82% cov

GOR1_YEAST / P53839: Glyoxylate reductase 1; EC 1.1.1.26; EC 1.1.1.79; EC 1.1.1.81 from Saccharomyces cerevisiae
GOR1 / P53839: glyoxylate reductase 1 (EC 1.1.1.26) from Saccharomyces cerevisiae

30% id,
68% cov

More...

HMPREF9452_RS08610 HMPREF9452_01719 WP_009141753.1: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

GYAR_THELN / Q9C4M5: Glyoxylate reductase; EC 1.1.1.26 from Thermococcus litoralis
Q9C4M5: glyoxylate reductase (EC 1.1.1.26) from Thermococcus litoralis

29% id,
87% cov

Q9UBQ7: glyoxylate reductase (EC 1.1.1.26); glyoxylate reductase (NADP+) (EC 1.1.1.79); hydroxypyruvate reductase (EC 1.1.1.81) from Homo sapiens

30% id,
82% cov

Q9C9W5: glyoxylate reductase (EC 1.1.1.26); glycerate dehydrogenase (EC 1.1.1.29); hydroxypyruvate reductase (EC 1.1.1.81) from Arabidopsis thaliana

28% id,
76% cov

More...

HMPREF9452_RS06835 HMPREF9452_01364 WP_009141399.1: D-2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Q9UBQ7: glyoxylate reductase (EC 1.1.1.26); glyoxylate reductase (NADP+) (EC 1.1.1.79); hydroxypyruvate reductase (EC 1.1.1.81) from Homo sapiens

30% id,
84% cov

GYAR_THELN / Q9C4M5: Glyoxylate reductase; EC 1.1.1.26 from Thermococcus litoralis
Q9C4M5: glyoxylate reductase (EC 1.1.1.26) from Thermococcus litoralis

26% id,
83% cov

HMPREF9452_RS00495 HMPREF9452_00089 WP_009140126.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

GYAR_THELN / Q9C4M5: Glyoxylate reductase; EC 1.1.1.26 from Thermococcus litoralis
Q9C4M5: glyoxylate reductase (EC 1.1.1.26) from Thermococcus litoralis

28% id,
85% cov

GOR1_YEAST / P53839: Glyoxylate reductase 1; EC 1.1.1.26; EC 1.1.1.79; EC 1.1.1.81 from Saccharomyces cerevisiae
GOR1 / P53839: glyoxylate reductase 1 (EC 1.1.1.26) from Saccharomyces cerevisiae

25% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

139278-140456 (frame -2) on NZ_JH126468.1 Collinsella tanakaei YIT 12063 supercont1.2, whole genome shotgun sequence
is similar to:
PaperBLAST

Q9LSV0: glyoxylate reductase (EC 1.1.1.26); 4-hydroxybutyrate dehydrogenase (EC 1.1.1.61); glyoxylate reductase (NADP+) (EC 1.1.1.79) from Arabidopsis thaliana

25% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory